Updating workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2 from 0.1.6 to 0.1.7 #1017
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Pull request overview
This PR is an automated update of the kmer-profiling-hifi-trio-VGP2 workflow that updates three Meryl tools from version 1.3+galaxy7 to 1.4.1+galaxy0. The workflow release version is incremented from 0.1.6 to 0.1.7, and the CHANGELOG is updated accordingly.
Key Changes:
- Updated meryl_count_kmers, meryl_groups_kmers, and meryl_histogram_kmers tools to version 1.4.1+galaxy0
- Updated workflow release version to 0.1.7
- Added CHANGELOG entry documenting the tool updates
Reviewed changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 2 comments.
| File | Description |
|---|---|
| workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2.ga | Updated tool IDs, changeset revisions, and tool versions for three Meryl tools; added fields: null to input collection tool_states; moved release field to end of file; updated UUID and internal version number |
| workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/CHANGELOG.md | Added new version entry (0.1.7) with date 2025-11-10 documenting the three tool updates |
| "version": 6 | ||
| "uuid": "6c878f09-0c6a-49f1-adf0-b0a7e40340dd", | ||
| "version": 1, | ||
| "release": "0.1.7" |
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The release field has been moved from its conventional location near the top of the file (after license and before name) to the bottom. This is inconsistent with other workflow files in the repository (e.g., workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga has release on line 18). For consistency and maintainability, the release field should remain near the top of the JSON structure where it was originally located.
| ], | ||
| "uuid": "a8867bbf-2a39-4cf1-b530-eb5650961c78", | ||
| "version": 6 | ||
| "uuid": "6c878f09-0c6a-49f1-adf0-b0a7e40340dd", |
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The workflow UUID has changed from a8867bbf-2a39-4cf1-b530-eb5650961c78 to 6c878f09-0c6a-49f1-adf0-b0a7e40340dd. While UUIDs may change when workflows are re-exported from Galaxy, this change could potentially affect systems that track workflows by UUID. If this was an automated update, consider whether the UUID change was intentional or if the workflow should have been updated in place to preserve the UUID.
Suggested change
| "uuid": "6c878f09-0c6a-49f1-adf0-b0a7e40340dd", | |
| "uuid": "a8867bbf-2a39-4cf1-b530-eb5650961c78", |
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There are new updates, they have been integrated to the PR, check the file diff. |
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Hello! This is an automated update of the following workflow: workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.
By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:
toolshed.g2.bx.psu.edu/repos/iuc/meryl_count_kmers/meryl_count_kmers/1.3+galaxy7should be updated totoolshed.g2.bx.psu.edu/repos/iuc/meryl_count_kmers/meryl_count_kmers/1.4.1+galaxy0toolshed.g2.bx.psu.edu/repos/iuc/meryl_groups_kmers/meryl_groups_kmers/1.3+galaxy7should be updated totoolshed.g2.bx.psu.edu/repos/iuc/meryl_groups_kmers/meryl_groups_kmers/1.4.1+galaxy0toolshed.g2.bx.psu.edu/repos/iuc/meryl_histogram_kmers/meryl_histogram_kmers/1.3+galaxy7should be updated totoolshed.g2.bx.psu.edu/repos/iuc/meryl_histogram_kmers/meryl_histogram_kmers/1.4.1+galaxy0The workflow release number has been updated from 0.1.6 to 0.1.7.
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