run_netmhcpan_script added#1

Open

Amirreza-0 wants to merge 83 commits intosoedinglab:masterfrom

Amirreza-0:master

Commits on Mar 19, 2025

modified
Amirreza-0
committed
added
Amirreza-0
committed

Commits on Mar 23, 2025

checking for False Negatives
Amirreza-0
committed

Commits on Mar 25, 2025

processing per cell_line_id with a simpler implementation, saving directly onto the disk in a csv file
Amirreza-0
committed
processing per cell_line_id with a simpler implementation, saving directly onto the disk in a csv file
Amirreza-0
committed
processing per cell_line_id with a simpler implementation, saving directly onto the disk in a csv file
Amirreza-0
committed

Commits on Mar 31, 2025

added support for MHC class I
Amirreza-0
committed

Commits on Apr 15, 2025

Commits on Apr 16, 2025

refactor SCQ model training pipeline and update dataset creation
Amirreza-0
committed

Commits on Apr 17, 2025

Commits on Apr 21, 2025

Commits on Apr 22, 2025

refactor model and run script: update SCQ parameters, enhance training configuration, and add UMAP visualization for quantized latent space
Amirreza-0
committed

Commits on Apr 23, 2025

Commits on Apr 24, 2025

Commits on Apr 25, 2025

add binding label functionality
Amirreza-0
committed

Commits on Apr 28, 2025

Refactor and enhance SCQ layer functionality and training logic
Amirreza-0
committed

Commits on Apr 29, 2025

MoE init
Amirreza-0
committed

Commits on Apr 30, 2025

Commits on May 6, 2025

Add visualization and training pipeline for Mixture-of-Experts (MoE) model
Amirreza-0
committed

Commits on May 8, 2025

Commits on May 12, 2025

Commits on May 13, 2025

Commits on May 14, 2025

Commits on May 16, 2025

Commits on May 26, 2025

Add ESM dataset creation and embedding extraction scripts: implement functions for loading embeddings, normalizing allele names, and creating test sets; include visualization utilities for PCA and …
Amirreza-0
committed

Commits on May 27, 2025

Commits on May 30, 2025

changed params
Amirreza-0
committed

Commits on Jun 3, 2025

Commits on Jun 8, 2025

fix: update output shape for peptide mask layer in model archive
Amirreza-0
committed

Commits on Jun 9, 2025

Commits on Jun 10, 2025

updated
Amirreza-0
committed

Commits on Jun 11, 2025

refactor dataset creation and processing functions for ESM-3 compatibility
Amirreza-0
committed

Commits on Jun 24, 2025

update model parameters and add new training scripts for memory optimization
Amirreza-0
committed

Commits on Jun 27, 2025

Commits on Jun 30, 2025