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@omicsEye

omicsEye

Understanding biology via novel machine learning, statistical, and visualization techniques on omics data for public health and precision medicine

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  1. omeClust omeClust Public

    multi-resolution clustering of omics data

    Python 14 5

  2. deepbreaks deepbreaks Public

    deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from a population.

    Jupyter Notebook 12 3

  3. seqLens seqLens Public

    Jupyter Notebook 5 1

  4. Workshop Workshop Public

    omicsEye workshops

    R 4 1

  5. cellSight cellSight Public

    R 3

  6. omePath omePath Public

    omePath: Omics Pathway Enrichment Analysis

    R 2 4

Repositories

Showing 10 of 32 repositories
  • LODReview Public
    omicsEye/LODReview’s past year of commit activity
    TeX 0 0 0 0 Updated Jan 5, 2026
  • 16S_DB Public

    This repository hosts scripts to generate a clean database of 16S references from NCBI RefSeq and SILVA.

    omicsEye/16S_DB’s past year of commit activity
    R 0 0 0 0 Updated Nov 5, 2025
  • waveome Public

    This is a repository that contains a python package for automated longitudinal data analysis using Gaussian processes.

    omicsEye/waveome’s past year of commit activity
    Jupyter Notebook 2 MIT 0 1 0 Updated Nov 1, 2025
  • deepbreaks Public

    deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from a population.

    omicsEye/deepbreaks’s past year of commit activity
    Jupyter Notebook 12 3 0 0 Updated Oct 22, 2025
  • Cancer-Microbiome Public

    This repository includes a set of analyses and visualization for project entitled "Meta-analytic microbiome target discovery for immune checkpoint inhibitor response in advanced melanoma".

    omicsEye/Cancer-Microbiome’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 22, 2025
  • massSight Public

    An R package for the alignment and scaling of LC-MS metabolomics data

    omicsEye/massSight’s past year of commit activity
    R 1 MIT 0 2 0 Updated Oct 17, 2025
  • resLens Public
    omicsEye/resLens’s past year of commit activity
    Python 2 1 0 0 Updated Jun 4, 2025
  • cellSight Public
    omicsEye/cellSight’s past year of commit activity
    R 3 MIT 0 0 0 Updated May 23, 2025
  • seqLens Public
    omicsEye/seqLens’s past year of commit activity
    Jupyter Notebook 5 1 0 0 Updated May 8, 2025
  • omeClust Public

    multi-resolution clustering of omics data

    omicsEye/omeClust’s past year of commit activity
    Python 14 MIT 5 0 1 Updated Apr 9, 2025
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