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Pull requests: loculus-project/loculus

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Pull requests list

chore(kubernetes): LAPIS 0.6.3 -> 0.6.7 deployment Code changes targetting the deployment infrastructure
#6074 opened Mar 4, 2026 by fengelniederhammer • Draft
2 tasks done
1
@fengelniederhammer
2
feat(deposition): deduplicate author affiliations and add tests deposition related to ENA/INSDC deposition
#6073 opened Mar 3, 2026 by anna-parker Loading…
1 of 3 tasks
2
feat(prepro): refactor prepro to split up backend internal metadata from customizable metadata fields preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd
#6071 opened Mar 3, 2026 by anna-parker Loading…
2 of 3 tasks
8
chore(deps-dev): bump minimatch from 9.0.5 to 9.0.9 in /integration-tests dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6069 opened Mar 2, 2026 by dependabot bot Loading…
feat(prepro): standardized displayNames preprocessing Issues related to the preprocessing component
#6066 opened Mar 2, 2026 by maverbiest • Draft
3 tasks
12
chore(deps): bump the minorandpatch group in /preprocessing/nextclade with 5 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6064 opened Mar 1, 2026 by dependabot bot Loading…
chore(deps): bump the minorandpatch group in /ingest with 13 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6062 opened Mar 1, 2026 by dependabot bot Loading…
chore(deps-dev): bump eslint from 9.39.2 to 10.0.2 in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6061 opened Mar 1, 2026 by dependabot bot Loading…
chore(deps): bump the minorandpatch group in /keycloak/keycloakify with 8 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6060 opened Mar 1, 2026 by dependabot bot Loading…
chore(deps): bump minimatch from 3.1.3 to 3.1.5 in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6059 opened Feb 28, 2026 by dependabot bot Loading…
feat(website): add Required Segments filter for multi-segmented viruses website Tasks related to the web application
#6057 opened Feb 27, 2026 by anna-parker Loading…
3 tasks
1
6
feat(deposition): always add timestamp to assemblyname and get test param directly from config deposition related to ENA/INSDC deposition
#6053 opened Feb 27, 2026 by anna-parker Loading…
3 tasks done
5
feat(website): display completeness filter as percentage in search bar deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6049 opened Feb 26, 2026 by theosanderson-agent Loading…
2 of 5 tasks
14
feat(prepro): create ncbi taxonomy DB to use in prepro github_actions Pull requests that update GitHub Actions code preprocessing Issues related to the preprocessing component
#6018 opened Feb 24, 2026 by maverbiest Loading…
3 tasks done
32
theo-exp deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#6011 opened Feb 21, 2026 by theosanderson • Draft
feat(preprocessing): preserve attached files through nextclade pipeline deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component
#6008 opened Feb 19, 2026 by theosanderson-agent Loading…
2 tasks
Custom lineage functions preprocessing Issues related to the preprocessing component website Tasks related to the web application
#6004 opened Feb 19, 2026 by anna-parker • Draft
3 tasks
2
feat(integration-tests): add tests for uncovered UI features e2e E2E test related tests Test related issues website Tasks related to the web application
#5995 opened Feb 17, 2026 by theosanderson-agent • Draft
3 of 4 tasks
8
demo: use cdk8s for deployment deployment Code changes targetting the deployment infrastructure
#5994 opened Feb 17, 2026 by theosanderson-agent • Draft
2
chore(website): remove zodios dependency and upgrade to zod v4 backend related to the loculus backend component website Tasks related to the web application
#5990 opened Feb 16, 2026 by theosanderson-agent • Draft
5 of 9 tasks
4
[PoC] Website/field selector modal website Tasks related to the web application
#5984 opened Feb 15, 2026 by rneher Loading…
3
fix(website): replace unsafe typecasts with runtime typeof checks website Tasks related to the web application
#5974 opened Feb 13, 2026 by theosanderson-agent • Draft
2 of 3 tasks
1
feat(deployment, backend, silo-importer): use incremental update option for silo imports
#5969 opened Feb 12, 2026 by theosanderson Loading…
2 of 3 tasks
1
45
[DO NOT MERGE] Test with trusting self-signed certificates backend related to the loculus backend component
#5946 opened Feb 5, 2026 by chaoran-chen • Draft
3 tasks
2
chore(deployment,website,tests): remove dummy pipeline and organisms deployment Code changes targetting the deployment infrastructure e2e E2E test related preprocessing Issues related to the preprocessing component
#5942 opened Feb 4, 2026 by theosanderson • Draft
9
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