Search results

Suspicious Warnings from --update-ref-alt Despite Unchanged Alleles

Status: Open.

#258 In gymrek-lab/TRTools;

· nicholema opened on Jun 18, 2025

the --update-sample-from-file does not work with --vcfs-list

Status: Open.

#257 In gymrek-lab/TRTools;

· yli091230 opened on Jun 6, 2025

Issue regarding mergeSTR

Status: Open.

#256 In gymrek-lab/TRTools;

· jawad9-11 opened on Apr 22, 2025

When performing quality control on dumpSTR for a T2T genome, what kind of file should be provided for the --filter-regions option?

Status: Open.

#255 In gymrek-lab/TRTools;

· jingydz opened on Apr 15, 2025

How to modify TRF's output file as an input?

Status: Open.

#254 In gymrek-lab/TRTools;

· tzhu-bio opened on Apr 10, 2025

Information about handling qcSTR

Status: Open.

#252 In gymrek-lab/TRTools;

· jawad9-11 opened on Feb 24, 2025

MergeSTR creating multiple duplicate entries in the output

Status: Open.

#251 In gymrek-lab/TRTools;

· Dhaksnamoorthy opened on Feb 11, 2025

Request: AnnotaTR dosage min/max instead of sum

Status: Open.

#250 In gymrek-lab/TRTools;

· raphaelbetschart opened on Jan 22, 2025

feat: a command for merging TR and SNP PGEN files

Status: Open.

#246 In gymrek-lab/TRTools;

· aryarm opened on Dec 17, 2024

switch to pixi

Status: Open.

#236 In gymrek-lab/TRTools;

· aryarm opened on Oct 10, 2024

Converting Beagle imputed VCF for TRTools

Status: Open.

#209 In gymrek-lab/TRTools;

· maegsul opened on Jan 24, 2024

statSTR handling of chrY

Status: Open.

#207 In gymrek-lab/TRTools;

· htanudisastro opened on Jan 22, 2024