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Description
Greetings,
The following is my mode and the error i am getting while using celseq2 pipeline.
My code:
celseq2 --config-file test.yaml --path-to/test.txt --output-dir result_dir1 -j 10
I got the following error in terminal:
Error in rule COOK_ANNOTATION:
jobid: 0
output: result_dir1/annotation/Homo_sapiens.GRCh38.pickle, result_dir1/annotation/Homo_sapiens.GRCh38.csv, _done_annotation
RuleException:
ContextualVersionConflict in line 520 of /path-to/celseq2/workflow/celseq2_beta.snakemake:
(plotly 2.7.0 (/path-to/.local/lib/python3.8/site-packages), Requirement.parse('plotly>=3'), {'xlmhg'})
File "/path-to/.local/lib/python3.8/site-packages/celseq2/workflow/celseq2_beta.snakemake", line 520, in __rule_COOK_ANNOTATION
File "/path-to/.loca/lib/python3.8/site-packages/genometools/init.py", line 24, in
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 901, in require
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 792, in resolve
File "/usr/lib/python3.8/concurrent/futures/thread.py", line 57, in run
Exiting because a job execution failed. Look above for error message
[ Thu Mar 3 12:56:57 2022 ] Demultiplexing ends /path-to/SRR4246941_1.fastq.gz--/path-to/SRR4246941_2.fastq.gz.
touch _done_combodemultiplex
Dynamically updating jobs
[Thu Mar 3 12:56:57 2022]
Finished job 13.
1 of 13 steps (8%) done
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: path-to/testcodes/umo/.snakemake/log/2022-03-03T125639.227066.snakemake.log
Thanks in advance