possible corner case issue with Rational get_rational_from_word(std::string word) in src/pmfe_types.cc

[ceheitsch]

Spawned from issue #4, but current implementation is not returning correct final value on output, e.g. "-11397/10" versus "-11253/10".

[maxieds]

@ceheitsch
Please try re-running with the latest code changes to see if the issue is fixed.

[ceheitsch]

@maxieds What output did you get with the latest code?

[ceheitsch]

@maxieds The output on math-mulberry should exactly match the output from math-oak as posted by @spoznan in #4.

[maxieds]

@ceheitsch
As you suggested at the meeting today, I reverted the source code on math-mulberry back to the original file source.

Now running with the updated (reverted) code and wrapper script, we obtain the output:

$ ./PMFECommandRunner.sh pmfe-findmfe --sequence /projects/rna/rnatope/Data/Onivara/fasta/o.nivara_tRNA.fasta -a 2280 -b 120 -c -594 -d 370
 [PMFE-WRAPPER-SCRIPT] PMFE utilities compiled at 2020-11-12
 [PMFE-WRAPPER-SCRIPT] from GitHub commit 50ee218a7860762061eee35b235fbd77b0ea076f
 [PMFE-WRAPPER-SCRIPT] posted at 2020-10-06

(((((((><((((........))))((((((.......))))))>..<(((((.......))))))))))))>	1	6	4	-321/10	-11253

Is this issue ready to be closed out for now?